SubtiBank SubtiBank
yybD [2018-05-17 15:48:54]
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yybD [2018-05-17 15:48:54]

unknown
locus
BSU40680
pI
6.16
mw
16.42 kDa
protein length
147 aa Sequence Blast
gene length
441 bp Sequence Blast
function
unknown
product
unknown
essential
no
synonyms
Outlinks
KEGGBsubCycSubtiListUniProtExpression Browser

Genomic Context

      

categories

  • [category|SW 6|Groups of genes] → [category|SW 6.7|Proteins of unknown function]

    • Gene

    Coordinates
    4,181,456 → 4,181,899

    The protein

    Protein family

  • UPF0039 (elaA) family (according to Swiss-Prot)

    • Paralogous protein(s)

  • [protein|AD0F95A25190DA7E253F4C93BC160B1EA91AAE04|YyaT], [protein|5E4C3ADF5B5D0215E9E350F16BCA57B208933606|YjcF]

    • Structure

  • [PDB|1Q2Y] (YjcF, 47% identity)

    • Expression and Regulation

    Operons

    genes
    [gene|9EC2800AF5B2B65BE3DEB4ABCCE7E448A24440DF|yybE]-[gene|DBEB1E43E1121D3D8AB6A0CA3BAF4072715F6577|yybD]-[gene|33C3EDF3709AC835C9C50B1B7978BA7C23EC9B9E|yybC]
    description
    [pubmed|22383849]
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    Biological materials

    Mutant

  • MGNA-B850 (yybD::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/1849 NBRP B. subtilis, Japan]
  • BKE40680 (Δ[gene|DBEB1E43E1121D3D8AB6A0CA3BAF4072715F6577|yybD]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE40680 BGSC], [Pubmed|28189581], upstream reverse: _UP1_TTTGACATTCATGCTTGAAT, downstream forward: _UP4_TAGATTGTTCACAAATTTGT
  • BKK40680 (Δ[gene|DBEB1E43E1121D3D8AB6A0CA3BAF4072715F6577|yybD]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK40680 BGSC], [Pubmed|28189581], upstream reverse: _UP1_TTTGACATTCATGCTTGAAT, downstream forward: _UP4_TAGATTGTTCACAAATTTGT